CURRICULUM VITAE

GENERAL

                    TANMOY BHATTACHARYA
                    Los Alamos National Laboratory
                    T-8, MS-B285
                    Los Alamos, NM 87545
                    United States of America
                    +1 (505) 665 4733

                    Date of birth: 5th November, 1962

EDUCATION

1982
B. Sc. in Physics, IIT, Kharagpur, India
1984
M. Sc. in Physics, IIT, Kharagpur, India
1989
Ph. D. in Physics, Tata Institute of Fundamental Research, Bombay, India

EMPLOYMENT

1989-91
Post-doctoral fellow at Brookhaven National Laboratory
1991-92
Post-doctoral fellow at Centre de Energie Atomique, Saclay
1992-95
Post-doctoral fellow at Los Alamos National Laboratory
1995-99
Limited Term Staff Member at Los Alamos National Laboratory
1999-
Staff Member at Los Alamos National Laboratory

PUBLICATIONS

This is a roughly reverse time-ordered list of my publications and a few unpublished papers. See my academic interests page for a brief description of the context in which this research sits.

The links from the author names go to their home pages. The ori links go directly to the papers. Note that on-line journals may need subscription. The arXiv identifiers link to the abstract of the paper on the e-print arXiv formerly at Los Alamos, which allows retrieval of the full text; it might be more convenient to access one of its mirror sites instead. Though every attempt is made to update them, the versions on the arXiv are not always completely up to date.

The spires links go to the Spires HEP database, which allows a citation search in high energy physics. The Spires citation summary page provides statistics of my career in HEP publication.

I have also added the number of citations each publication had on June 2nd 2008. The number quoted is the larger of the result from SciSearch and from the DLAC SPIRES databases.

Papers

  1. Detecting Recombination within Highly Similar Sequences In preparation.
  2. Positive Darwinian Selection Acting on the HIV-1 Envelope Gene in Acute and Early Infection In preparation.
  3. Highly Complex Neutralization Determinants on a Monophyletic Lineage of Newly Transmitted Subtype C Human Immunodeficiency Virus Type 1 Env Clones from India Submitted.
  4. Modeling Sequence Evolution in Acute HIV-1 Infection Submitted.
  5. Identification and the Characterization of Transmitted and Early Founder Virus Envelopes in Primary HIV-1 Infection (Brandon F. Keele, Elena E. Giorgi, Jesus Salazar-Gonzalez, Julie M. Decker, Kimmy T. Pham, Maria G. Salazar, Chuanxi Sun, Truman Grayson, Shuyi Wang, Hui Li, Xiping Wei, Chunlai Jiang, Jennifer L. Kirchherr, Feng Gao, Jeffrey A. Anderson, Li-Hua Ping, Ronald Swanstrom, Georgia D. Tomaras, William A. Blattner, Paul A. Goepfert, J. Michael Kilby, Michael S. Saag, Eric L. Delwart, Michael P. Busch, Myron S. Cohen, David C. Montefiori, Barton F. Haynes, Brian Gaschen, Gayathri S. Athreya, Ha Y. Lee, Natasha Wood, Cathal Seoighe, Alan S. Perelson, Tanmoy Bhattacharya, Bette T. Korber, Beatrice H. Hahn, George M. Shaw) Proceedings of the National Academy of Sciences 105:21 (2008) 7552–7557 ori:doi:10.1073/pnas.0802203105. Published online May 19, 2008.
  6. Genomic imprinting and risk-taking In preparation
  7. Web-based design and evaluation of T-cell vaccine candidates (James Thurmond, Hyejin Yoon, Carla Kuiken, Karina Yusim, Simon Perkins, James Theiler, Tanmoy Bhattacharya, Bette Korber, and Will Fischer). Bioinformatics 24:14 (2008) 1639–1640 Published online 29 May 2008 ori:doi:10.1093/bioinformatics/btn251.
  8. HLA Class-I Driven Evolution of Human Immunodeficiency Virus Type 1 Subtype C Proteome: Immune Escape and Viral Load (Christine M. Rousseau, Marcus G. Daniels, Jonathan M. Carlson, Carl Kadie, Hayley Crawford, Andrew Prendergast, Philippa Matthews, Rebecca Payne, Morgane Rolland, Dana N. Raugi, Brandon S. Maust, Gerald H. Learn, David C. Nickle, Hoosen Coovadia, Thumbi Ndung'u, Nicole Frahm, Christian Brander, Bruce D. Walker, Philip J. R. Goulder, Tanmoy Bhattacharya, David E. Heckerman, Bette T. Korber, and James I. Mullins) Journal of Virology 82:13 (2008) 6434–6446 Published ahead of print 23 April 2008 ori:doi:10.1128/JVI.02455-07.
  9. Evidence of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1 (Zabrina L. Brumme, Chanson J. Brumme, David Heckerman, Bette T. Korber, Marcus Daniels, Jonathan Carlson, Carl Kadie, Tanmoy Bhattacharya, Celia Chui, James Szinger, Theresa Mo, Robert S. Hogg, Julio S.G. Montaner, Nicole Frahm, Christian Brander, Bruce D. Walker, and P. Richard Harrigan), Public Library of Science Pathogens 3:7 (2007) e94 ori:doi:10.1371/journal.ppat.0030094. Los Alamos preprint LA-UR-07-0410, Jan 2007. 5 citations as of Jun 2 2008
  10. Extensive Intra-subtype Recombination in South African Human Immunodeficiency Virus Type 1 Subtype C Infections (Christine M. Rousseau, Gerald H. Learn, Tanmoy Bhattacharya, David C. Nickle, David Heckerman, Senica Chetty, Christian Brander, Philip J.R. Goulder, Bruce D. Walker, Photini Kiepiela, Bette T. Korber, and James I. Mullins), Journal of Virology 81:9 (2007) 4492–4500 ori:doi:10.1128/JVI.02050-06. Los Alamos preprint LA-UR-06-6156, September 2006. 3 citations as of Jun 2 2008
  11. Clade Specific Differences between Human Immunodeficiency Virus Type 1 Clades B and C: Diversity and Correlations in C3–V4 Regions of gp120 (S. Gnanakaran, Dorothy Lang, Marcus Daniels, Tanmoy Bhattacharya, Cynthia Derdyn, and Bette Korber), Journal of Virology 81:9 (2007) 4886–4891 ori:doi:10.1128/JVI.01954-06. Los Alamos preprint LA-UR-06-1255. 5 citations as of Jun 2 2008
  12. Chiral Lattice Gauge theories from Warped Domain Walls and Ginsparg-Wilson Fermions (Tanmoy Bhattacharya, Matthew R. Martin, and Erich Poppitz), Physical Review D74:8 (2006) 085028; ori:doi:10.1103/PhysRevD.74.085028. Los Alamos preprint LA-UR-06-2667, April 2006. ori:oai:arXiv.org:hep-lat/0605003 [Citebase, spires]. 6 citations as of Jun 2 2008
  13. Human Leukocyte Antigen-Associated Sequence Polymorphisms in Hepatitis C Virus Reveal Reproducible Immune Responses and Constraints on Viral Evolution (Joerg Timm, Bin Li, Marcus G. Daniels, Tanmoy Bhattacharya, Laura L. Reyor, Rachel Allgaier, Thomas Kuntzen, Will Fischer, Brian E. Nolan, Jared Duncan, Julian Schulze zur Wiesch, Arthur Y. Kim, Nicole Frahm, Christian Brander, Raymond T. Chung, George M. Lauer, Bette T. Korber, and Todd M. Allen), Hepatology, 46:2 (2007) 339–349 ori:doi:10.1002/hep.21712. Los Alamos preprint LA-UR-06-8196, November 2006. 5 citations as of Jun 2 2008
  14. Founder effects in population based assessment of HIV polymorphisms and HLA allele associations or Founder effects contribute to perceived associations between HIV sequence polymorphisms and HLA class I alleles (Tanmoy Bhattacharya, Marcus Daniels, David Heckerman, Brian Foley, Nicole Frahm, Carl Kadie, Jonathan Carlson, Karina Yusim, Ben McMahon, Brian Gaschen, Simon Mallal, James I. Mullins, David C. Nickle, Joshua Herbeck, Christine Rousseau, Gerald H. Learn, Toshiyuki Miura, Christian Brander, and Bruce Walker, and Bette Korber) Science 315:5818 (2007) 1583–1586 ori:doi:10.1126/science.1131528. Los Alamos preprint LA-UR-06-3312, May 2006.
    Subsumes
    Multiple factors impact negative associations between HIV sequence polymorphisms and HLA class I alleles Los Alamos preprint LA-UR-05-3897, May 2005. 23 citations as of Jun 2 2008
  15. Polyvalent HIV-1 vaccines for optimal coverage of potential T-cell epitopes in diverse global variants (Will Fischer, Simon Perkins, James Theiler, Tanmoy Bhattacharya, Karina Yusim, Robert Funkhouser, Carla Kuiken, Barton Haynes, Norman L. Letvin, Bruce D. Walker, Beatrice H. Hahn, and Bette T. Korber) Nature Medicine 13:1 (2007) 100–106 ori:doi:10.1038/nm1461. Los Alamos preprint LA-UR-06-3608, May 2006. 16 citations as of Jun 2 2008
  16. Warped Domain Wall Fermions (Tanmoy Bhattacharya, Csaba Csáki, Matthew R. Martin, Yuri Shirman, and John Terning), Journal of High Energy Physics JHEP08 (2005) 061; ori:doi:10.1088/1126-6708/2005/08/061. Los Alamos preprint LA-UR-05-1569, March 2005. ori:oai:arXiv.org:hep-lat/0503011 [Citebase, spires]. 7 citations as of Jun 2 2008
  17. BK from quenched QCD with improved staggered fermions. or Testing improved staggered fermions with ms and BK. (Weonjong Lee, Tanmoy Bhattacharya, George T. Fleming, Rajan Gupta, Gregory Kilcup, and Stephen Sharpe), Physical Review D71:09 (2005) 094501; ori:doi:10.1103/PhysRevD.71.094501. Los Alamos preprint LA-UR-04-4788 , University of Washington preprint UW-PT 04-11, and Seoul National University preprint SNUTP-04-008, July 2004. ori:oai:arXiv.org:hep-lat/0409047 [Citebase, spires]. 18 citations as of Jun 2 2008
  18. Feedback cooling of atomic motion in cavity QED. (Tanmoy Bhattacharya, Salman Habib, Kurt Jacobs, Hideo Mabuchi, and Daniel A. Steck) Physical Review A74:1 (2006) 012322; ori:doi:10.1103/PhysRevA.74.012322. Los Alamos preprint LA-UR-04-4687, July 2004. ori:oai:arXiv.org:quant-ph/0509039 [Citebase]. 5 citations as of Jun 2 2008
  19. Successive dominance of human immunodeficiency virus type 1 sequences in patients receiving combination antiretroviral therapy or Evolution of human immunodeficiency virus type 1 sequences in patients receiving combination antiretroviral therapy. (Carla Kuiken, Kevin Kunstman, Tanmoy Bhattacharya, Jennifer Kunstman, Kristina Kommander, John Phair, Benjamin Good, Satish Pillai, and Steven Wolinsky), Los Alamos preprint LA-UR-04-5456.
  20. Quantum Feedback Control of Atomic Motion in an Optical Cavity. (Daniel A. Steck, Kurt Jacobs, Hideo Mabuchi, Tanmoy Bhattacharya, and Salman Habib) Phys. Rev. Lett. 92:22 (2004) 223004; ori:doi:10.1103/PhysRevLett.92.223004. Los Alamos preprint LA-UR-03-6826, September 2003; ori:oai:arXiv.org:quant-ph/0310153 . [Citebase, spires].
  21. The transition to classical chaos in a coupled quantum system through continuous measurement. (Shohini Ghose, Paul Alsing, Ivan Deutsch, Tanmoy Bhattacharya, Salman Habib, and Kurt Jacobs) Phys. Rev. A69:5 (2004) 052116; ori:doi:10.1103/PhysRevA.69.052116. Los Alamos preprint LA-UR-03-5886, August 2003; ori:oai:arXiv.org:quant-ph/0309093. [Citebase].
  22. Improved bilinears in lattice QCD with non-degenerate quarks. (Tanmoy Bhattacharya, Rajan Gupta, Weonjong Lee, Stephen Sharpe, and Jackson M.S. Wu) Physical Review D73:3 (2006) 034504; ori:doi:10.1103/PhysRevD.73.034504. Los Alamos preprint LA-UR-03-4939, July 2003; University of Washington preprint UW/PT 03-20, September 2003. ori:oai:arXiv.org:hep-lat/0511014. [Citebase, spires]. 8 citations as of Jun 2 2008
  23. Scaling behavior of discretization errors in renormalization and improvement constants. (Tanmoy Bhattacharya, Rajan Gupta, Weonjong Lee, and Stephen Sharpe) Phys. Rev. D73:11 (2006) 114507; ori:doi:10.1103/PhysRevD.73.114507. Los Alamos preprint LA-UR-03-3849, June 2003. ori:oai:arXiv.org:hep-lat/0509160. [Citebase, spires]. 5 citations as of Jun 2 2008
  24. Timing of the HIV-1 subtype C epidemic in Ethiopia: An improved estimate using maximum likelihood methods. or Molecular Paleontology of HIV-1 M Subtype C in Ethiopia. (Una Smith, Tanmoy Bhattacharya, and Carla L. Kuiken) Los Alamos preprint LA-UR-02-7315, November 2002.
  25. Continuous Quantum Measurement and the Quantum to Classical Transition. (Tanmoy Bhattacharya, Salman Habib, and Kurt Jacobs) Phys. Rev. A67:4 (2003) 042103; ori:doi:10.1103/PhysRevA.67.042103. Los Alamos preprint LA-UR-02-5289, August 2002; ori:oai:arXiv.org:quant-ph/0211036. [Citebase]. 10 citations as of Jun 2 2008
  26. Recovering Classical Dynamics from Coupled Quantum Systems through Continuous Measurement. (Shohini Ghose, Paul Alsing, Ivan Deutsch, Tanmoy Bhattacharya, Salman Habib, and Kurt Jacobs) Phys. Rev. A67:5 (2003) 052102; ori:doi:10.1103/PhysRevA.67.052102. Los Alamos preprint LA-UR-02-5290, August 2002; ori:oai:arXiv.org:quant-ph/0208064. [Citebase]. 8 citations as of Jun 2 2008
  27. Diversity Considerations in HIV-1 Vaccine Selection (Brian Gaschen, Jesse Taylor, Karina Yusim, Brian Foley, Feng Gao, Dorothy Lang, Vladimir Novitsky, Barton Haynes, Beatrice H. Hahn, Tanmoy Bhattacharya, and Bette Korber) Science 296:5577 (2002) 2354–2360. (June 28, 2002; number 5577) ori:doi:10.1126/science.1070441; Available without subscription; PubMed id 12089434. Consensus and Ancestral State HIV Vaccines: Response (F. Gao, T. Bhattacharya, B. Gaschen, J. Taylor, J.P. Moore, V. Novitsky, K. Yusim, D. Lang, B. Foley, S. Beddows, M. Alam, B. Haynes, B.H. Hahn, and B. Korber) Science 299:5612 (2003) 1517–1518. (March 7, 2003; number 5612); ori:doi:10.1126/science.299.5612.1515c; 214 citations as of Jun 2 2008 PubMed id 12624248.
  28. Strange Happenings at the Quantum-Classical Boundary: The Delta-Kicked Rotor. or The δ-function-kicked rotor: Momentum diffusion and the quantum-classical boundary. (T. Bhattacharya, S. Habib, K. Jacobs, and K. Shizume) Phys. Rev. A65:3 (2002) 032115; ori:doi:10.1103/PhysRevA.65.032115. Los Alamos preprint LA-UR-01-1909 May 2001. Los Alamos preprint LA-UR-01-6307, November 2001. ori:oai:arXiv.org:quant-ph/0105086. [Citebase]. 5 citations as of Jun 2 2008
  29. Using Human Immunodeficiency Virus Type 1 Sequences to Infer Historical Features of the Acquired Immune Deficiency Syndrome Epidemic and Human Immunodeficiency Virus Evolution. (Karina Yusim, Martine Peeters, Oliver G. Pybus, Tanmoy Bhattacharya, Éric Delaporte, Claire Mulanga, Mark Muldoon, James Theiler, and Bette Korber) Philosophical Transactions of the Royal Society, London, B 356 (2001) 855–866; ori:doi:10.1098/rstb.2001.0859. PubMed id 11405933. 28 citations as of Jun 2 2008
  30. Order a Improved Renormalization Constants. (T. Bhattacharya, R. Gupta, W. Lee, and S. Sharpe) Phys. Rev. D63:7 (2001) 074505; ori:doi:10.1103/PhysRevD.63.074505. Los Alamos preprint LA-UR-00-3538 and University of Washington preprint UW/PT-00-16, September 2000. ori:oai:arXiv.org:hep-lat/0009038. [Citebase, spires]. 63 citations as of Jun 2 2008
  31. Timing the Ancestor of the HIV-1 Pandemic Strains. (B. Korber, M. Muldoon, J. Theiler, F. Gao, R. Gupta, A. Lapedes, B.H. Hahn, S. Wolinsky, and T. Bhattacharya) Science 288:5472 (2000) 1789–1796. (June 9, 2000; number 5472) ori:doi:10.1126/science.288.5472.1789; PubMed id 10846155. Search for the Origin of HIV and AIDS : Response. (B. Korber, T. Bhattacharya, J. Theiler, R. Gupta, A. Lapedes, B. Hahn, F. Gao, M. Muldoon, and S. Wolinsky) Science 289:5482 (2000) 1140–1141. (August 18, 2000; number 5482) ori:doi:10.1126/science.289.5482.1140; PubMed id 10970225. 292 citations as of Jun 2 2008
  32. Continuous Quantum Measurement and the Emergence of Classical Chaos. (T. Bhattacharya, S. Habib, and K. Jacobs) Phys. Rev. Lett. 85:23 (2000) 4852–4855; ori:doi:10.1103/PhysRevLett.85.4852. Los Alamos preprint LA-UR-99-3187 June 1999. ori:oai:arXiv.org:quant-ph/9906092. [Citebase, spires]. 44 citations as of Jun 2 2008
  33. Non-perturbative Renormalization Constants using Ward Identities. (T. Bhattacharya, S. Chandrasekharan, R. Gupta, W. Lee, and S. Sharpe) Phys. Lett. B461:1–2 (1999) 79–88; ori:doi:10.1016/S0370-2693(99)00796-0. Los Alamos preprint LAUR-99-1717, University of Washington preprint UW-PT/98-15, University of Tsukuba preprint UTCCP-P-56, and Duke University preprint DUKE-TH-99-185, April 1999. ori:oai:arXiv.org:hep-lat/9904011 [Citebase, spires]. 24 citations as of Jun 2 2008
  34. Heavy-light Mesons and Baryons with b quarks. (A. Ali Khan, T. Bhattacharya, S. Collins, C.T.H. Davies, R. Gupta, C. Morningstar, J. Shigemitsu, and J. Sloan) Phys. Rev. D62:5 (2000) 054505; ori:doi:10.1103/PhysRevD.62.054505. Los Alamos preprint LAUR-99-723, OSU preprint OHSTPY-HEP-T-98-018, and University of Tsukuba preprint UTCCP-P-77, December 1999. ori:oai:arXiv.org:hep-lat/9912034 [Citebase, spires]. 55 citations as of Jun 2 2008
  35. B Meson Decay Constants from NRQCD. (A. Ali Khan, T. Bhattacharya, S. Collins, C.T.H. Davies, R. Gupta, C. Morningstar, J. Shigemitsu, and J. Sloan) Phys. Lett. B427:1–2 (1998) 132–140; ori:doi:10.1016/S0370-2693(98)00323-2. Los Alamos preprint LA-UR-97-4642 and OSU preprint OHSTPY-HEP-T-97-017, January 1998. ori:oai:arXiv.org:hep-lat/9801038 [Citebase, spires]. 42 citations as of Jun 2 2008
  36. Duality and the Extraction of Light Quark Masses From Finite Energy and QCD Sum Rules. or Extraction of Light Quark Masses from Sum Rule Analyses of Axial Vector and Vector Current Ward IDentities. (Tanmoy Bhattacharya, Rajan Gupta, and Kim Maltman) Phys. Rev. D57:9 (1998) 5455–5467; ori:doi:10.1103/PhysRevD.57.5455. Los Alamos preprint LA-UR-96-2698, March 1997. ori:oai:arXiv.org:hep-ph/9703455 [Citebase, spires]. 31 citation as of Jun 2 2008
  37. Matrix Elements of 4-fermion Operators with Quenched Wilson Fermions. (R. Gupta, T. Bhattacharya, and S. Sharpe) Phys. Rev. D55:7 (1997) 4036–4054; ori:doi:10.1103/PhysRevD.55.4036. Los Alamos preprint LA-UR-96-1829 and University of Washington preprint UW/PT-96-12, November 1996. ori:oai:arXiv.org:hep-lat/9611023 [Citebase, spires]. 115 citations as of Jun 2 2008
  38. Comment on “Gravitationally Induced Neutrino-Oscillation Phases.” or Gravitationally induced neutrino oscillation phases in static spacetimes (T. Bhattacharya, S. Habib, and E. Mottola) Phys. Rev. D59:6 (1999) 067301; ori:doi:10.1103/PhysRevD.59.067301. ori:oai:arXiv.org:gr-qc/9605074 [Citebase, spires(eprint), spires(paper)]. 39 citations as of Jun 2 2008
  39. Light Quark Masses from Lattice QCD. (R. Gupta and T. Bhattacharya) Phys. Rev. D55:11 (1997) 7203–7217; ori:doi:10.1103/PhysRevD.55.7203. Los Alamos preprint LA-UR-96-1840, May 1996. ori:oai:arXiv.org:hep-lat/9605039 [Citebase, spires]. 115 citations as of Jun 2 2008
  40. Large q Expansion of the 2D q-states Potts' Model. (T. Bhattacharya, R. Lacaze and A. Morel) J. Phys. I7:1 (1997) 81–103; ori:doi:10.1051/jp1:1997127. Saclay preprint SACLAY-SPHT-96-001, January 1996. ori:oai:arXiv.org:hep-lat/9601012 [Citebase, spires]. 8 citations as of Jun 2 2008
  41. Hadron Spectrum with Wilson fermions. (T. Bhattacharya, R. Gupta, G. Kilcup, and S. Sharpe) Phys. Rev. D53:11 (1996) 6486–6508; ori:doi:10.1103/PhysRevD.53.6486. Los Alamos preprint LA-UR-95-2354, October 1995. ori:oai:arXiv.org:hep-lat/9512021 [Citebase, spires]. 63 citations as of Jun 2 2008
  42. Decay Constants with Wilson Fermions at β=6.0. (T. Bhattacharya and R. Gupta) Phys. Rev. D54:1 (1996) 1155–1166; ori:doi:10.1103/PhysRevD.54.1155. Los Alamos preprint LA-UR-95-2355, October 1995. ori:oai:arXiv.org:hep-lat/9510044 [Citebase, spires]. 22 citations as of Jun 2 2008
  43. Large Energy Cumulants in the 2-d Potts' Model and their Effects in Finite Size Analysis. (T. Bhattacharya, R. Lacaze, and A. Morel) Nucl. Phys. B435:3 (1995) 526–554; ori:doi:10.1016/0550-3213(94)00393-S. Saclay Preprint SACLAY-SPHT-94-008, July 1994. ori:oai:arXiv.org:hep-lat/9407004 [Citebase, spires]. 12 citations as of Jun 2 2008
  44. Semileptonic Form-Factors of Heavy-Light Mesons From Lattice QCD. (R. Gupta, T. Bhattacharya, and D. Daniel) Los Alamos preprint, LA-UR-93-3580, October 1993. ori:oai:arXiv.org:hep-lat/9310007 [Citebase] 5 citations as of Jun 2 2008
  45. The Free Energy of the Potts' Model: From the Continuous to the First Order Transition Region. (T. Bhattacharya, R. Lacaze, and A. Morel) Europhys. Lett. 23 (1993) 547. Saclay preprint SACLAY-SPHT-93-022, March 1993. ori:oai:arXiv.org:hep-th/9303075 [Citebase, spires]. 17 citations as of Jun 2 2008
  46. Critical Behavior of the Antiferromagnetic Heisenberg Model on a Stacked Triangular Lattice. (T. Bhattacharya, A. Billoire, R. Lacaze, and Th. Jolicœur) J. Phys. I4:2 (1994) 181–186; ori:doi:10.1051/jp1:1994131. Saclay preprint SACLAY-SPHT-93-015, Fe